science

Publications

We believe in the power of open science to drive innovation and foster collaboration. Here are the published papers from our funded researchers.

The following publications report findings from projects funded by the Biswas Family Foundation.

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September 1, 2026

Learning Universal Representations of Intermolecular Interactions with ATOMICA

GitHub
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Associated Project:
AI for Cancer Genomic Medicine
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Software
July 16, 2026

Medea: An AI agent for therapeutic reasoning across biological contexts

bioRxiv
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Associated Project:
AI for Cancer Genomic Medicine
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
July 3, 2026

Generalizable AI Predicts Immunotherapy Outcomes Across Cancers and Treatments

Nature Medicine
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
June 27, 2026

An AI agent for treatment reasoning over a biomedical tool universe

arXiv
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Associated Project:
AI for Cancer Genomic Medicine
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
June 22, 2026

PROTON

GitHub
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Associated Project:
CURE-Bench
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Software
June 11, 2026

Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine

npj Digital Medicine
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
May 24, 2026

StereoPep

GitHub
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Associated Project:
AI for Cancer Genomic Medicine
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Software
May 24, 2026

StereoPep: Do Molecular Models Understand Stereochemistry? A Benchmark on Synthetic Diastereomeric Peptides

ChemRxiv
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Associated Project:
AI for Cancer Genomic Medicine
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
March 28, 2026

Machine Learning-Predicted Chromatin Organization Landscape Across Pediatric Tumors

Scientific Reports
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Associated Project:
Biswas Center for Transformative Computational Cancer Biology
Principal Investigator:

Katherine Pollard, PhD, Director of Data Science & Biotechnology, Gladstone Institutes

Category:
Preprints
March 27, 2026

Scaling and quantization of large-scale foundation model enables resource-efficient predictions in network biology

Nature Computational Science
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Associated Project:
Biswas Center for Transformative Computational Cancer Biology
Principal Investigator:

Katherine Pollard, PhD, Director of Data Science & Biotechnology, Gladstone Institutes

Category:
Papers
February 26, 2026

Act or Defer: Error-Controlled Decision Policies for Medical Foundation Models

medRxiv
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Associated Project:
CURE-Bench
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
February 3, 2026

Medea: A biomolecular sandwich assay to characterize the binding properties of antisense oligonucleotide conjugates

ChemRxiv
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Associated Project:
AI for Cancer Genomic Medicine
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers

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