science

Publications

We believe in the power of open science to drive innovation and foster collaboration. Here are the published papers from our funded researchers.

The following publications report findings from projects funded by the Biswas Family Foundation.

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July 15, 2025

Learning Universal Representations of Intermolecular Interactions with ATOMICA

bioRxiv
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Associated Project:
AI for Cancer Genomic Medicine: Circuitry, Treatment, Personalization
Principal Investigator:

Manolis Kellis, PhD, Professor of Computer Science, Massachusetts Institute of Technology

Category:
Preprints
July 7, 2025

SPATIA: Multimodal Model for Prediction and Generation of Spatial Cell Phenotypes

arXiv
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Associated Project:
AI for Cancer Genomic Medicine: Circuitry, Treatment, Personalization
Principal Investigator:

Manolis Kellis, PhD, Professor of Computer Science, Massachusetts Institute of Technology

Category:
Preprints
June 29, 2025

Multimodal Medical Code Tokenizer

arXiv
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
June 11, 2025

One Patient, Many Contexts: Scaling Medical AI Through Contextual Intelligence

arXiv
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Associated Project:
CURE-Bench
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers
June 4, 2025

ReXVQA: A Large-Scale Visual Question Answering Benchmark for Generalist Chest X-Ray Understanding

arXiv
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Associated Project:
The MAIDA Initiative: Democratizing Global Medical Imaging Data Sharing for Safer and Fairer AI
Principal Investigator:

Pranav Rajpurkar, PhD, Assistant Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
June 3, 2025

Controllable Sequence Editing for Biological and Clinical Trajectories

arXiv
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
May 10, 2025

ReXGradient-160K: A Large-Scale Publicly Available Dataset of Chest Radiographs with Free-Text Reports

arXiv
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Associated Project:
The MAIDA Initiative: Democratizing Global Medical Imaging Data Sharing for Safer and Fairer AI
Principal Investigator:

Pranav Rajpurkar, PhD, Assistant Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
May 7, 2025

ClinVec: Unified Embeddings of Clinical Codes Enable Knowledge-Grounded AI in Medicine

medRXiv
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
April 27, 2025

Neighborhood Nonnegative Matrix Factorization Identifies Patterns and Spatially-Variable Genes in Large-Scale Spatial Transcriptomics Data

bioRxiv
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Associated Project:
Biswas Center for Transformative Computational Cancer Biology
Principal Investigator:

Katherine Pollard, PhD, Director of Data Science & Biotechnology, Gladstone Institutes

Category:
Preprints
March 14, 2025

TxAgent: An AI Agent for Therapeutic Reasoning Across a Universe of Tools

arXiv
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
March 4, 2025

Multimodal AI Predicts Clinical Outcomes of Drug Combinations from Preclinical Data

arXiv
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Preprints
January 22, 2025

KGARevion: An AI Agent for Knowledge-Intensive Biomedical QA

ICLR 2025 Conference
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Associated Project:
CURE-Bench: Universal Benchmark for All-Disease Drug Repurposing
Principal Investigator:

Marinka Zitnik, PhD, Associate Professor of Biomedical Informatics, Harvard Medical School

Category:
Papers

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